VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD |
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BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query=
(47 letters)
Database: /tmp/Blast/protein/polymeraa
8888 sequences; 5,176,365 total letters
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Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pol:370cpl:50006894>>Estrogen receptor beta<< 98 4e-22
pol:50001950cpl:50006747>>Estrogen receptor beta<< 84 6e-18
pol:50002018cpl:50007466>>Estrogen receptor beta<< 83 1e-17
pol:50007898cpl:50019437>>Estrogen receptor beta<< 74 5e-15
pol:50006633>>DNA-directed RNA polymerase I subunit RPA1<< 25 5.2
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549 Ki 2908 IC50 20 Kd 854 EC50 Enzyme Inhibition Data in BindingDB for Estrogen receptor beta >pol:370cpl:50006894>>Estrogen receptor beta<<
Length = 530
Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD
Sbjct: 215 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 261
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2 Ki 61 IC50 7 Kd 25 EC50 Enzyme Inhibition Data in BindingDB for Estrogen receptor beta >pol:50001950cpl:50006747>>Estrogen receptor beta<<
Length = 530
Score = 84.0 bits (206), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 43/47 (91%)
Query: 1 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
VKCGSRRERCGYR+VRRQRS+ EQ+HC KAKR+GGHAPRV+ELLL
Sbjct: 215 VKCGSRRERCGYRIVRRQRSSSEQVHCLSKAKRNGGHAPRVKELLLS 261
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1 Ki 9 IC50 1 EC50 Enzyme Inhibition Data in BindingDB for Estrogen receptor beta >pol:50002018cpl:50007466>>Estrogen receptor beta<<
Length = 530
Score = 82.8 bits (203), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 1 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
VKCGSRRERCGYR+VRRQRSA EQ+HC KAKR+ GH PRV+ELLL+
Sbjct: 215 VKCGSRRERCGYRIVRRQRSASEQVHCLNKAKRTSGHTPRVKELLLN 261
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4 IC50 12 Kd Enzyme Inhibition Data in BindingDB for Estrogen receptor beta >pol:50007898cpl:50019437>>Estrogen receptor beta<<
Length = 527
Score = 74.3 bits (181), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 1 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
VKCGSRRERCGYR+VRRQR++DEQLHC K KR+G RV+ELLL
Sbjct: 212 VKCGSRRERCGYRIVRRQRNSDEQLHCLSKTKRNGAPMTRVKELLLS 258
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78 IC50 Enzyme Inhibition Data in BindingDB for DNA-directed RNA polymerase I subunit RPA1 >pol:50006633>>DNA-directed RNA polymerase I subunit RPA1<<
Length = 1720
Score = 24.6 bits (52), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 15 VRRQRSADEQLHCAGKAKRSGGHAP 39
V+RQR +E HC +A R+ + P
Sbjct: 810 VKRQRIIEESTHCGPQAVRAALNLP 834
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Database: /tmp/Blast/protein/polymeraa
Posted date: Mar 5, 2024 2:09 PM
Number of letters in database: 5,176,365
Number of sequences in database: 8888
Lambda K H
0.325 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8888
Number of Hits to DB: 468,996
Number of extensions: 11800
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 47
Length of database: 5,176,365
Length adjustment: 21
Effective length of query: 26
Effective length of database: 4,989,717
Effective search space: 129732642
Effective search space used: 129732642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)
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