BLAST Output


VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 
         (47 letters)

Database: /tmp/Blast/protein/polymeraa 
           8888 sequences; 5,176,365 total letters
Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pol:370cpl:50006894>>Estrogen receptor beta<<                          98   4e-22
pol:50001950cpl:50006747>>Estrogen receptor beta<<                     84   6e-18
pol:50002018cpl:50007466>>Estrogen receptor beta<<                     83   1e-17
pol:50007898cpl:50019437>>Estrogen receptor beta<<                     74   5e-15
pol:50006633>>DNA-directed RNA polymerase I subunit RPA1<<             25   5.2  
549 Ki  2908 IC50  20 Kd  854 EC50  Enzyme Inhibition Data in BindingDB for Estrogen receptor beta
>pol:370cpl:50006894>>Estrogen receptor beta<<
          Length = 530

 Score = 98.2 bits (243), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1   VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
           VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD
Sbjct: 215 VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 261

2 Ki  61 IC50  7 Kd  25 EC50  Enzyme Inhibition Data in BindingDB for Estrogen receptor beta
>pol:50001950cpl:50006747>>Estrogen receptor beta<<
          Length = 530

 Score = 84.0 bits (206), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 1   VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
           VKCGSRRERCGYR+VRRQRS+ EQ+HC  KAKR+GGHAPRV+ELLL 
Sbjct: 215 VKCGSRRERCGYRIVRRQRSSSEQVHCLSKAKRNGGHAPRVKELLLS 261

1 Ki  9 IC50  1 EC50  Enzyme Inhibition Data in BindingDB for Estrogen receptor beta
>pol:50002018cpl:50007466>>Estrogen receptor beta<<
          Length = 530

 Score = 82.8 bits (203), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 42/47 (89%)

Query: 1   VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
           VKCGSRRERCGYR+VRRQRSA EQ+HC  KAKR+ GH PRV+ELLL+
Sbjct: 215 VKCGSRRERCGYRIVRRQRSASEQVHCLNKAKRTSGHTPRVKELLLN 261

4 IC50  12 Kd  Enzyme Inhibition Data in BindingDB for Estrogen receptor beta
>pol:50007898cpl:50019437>>Estrogen receptor beta<<
          Length = 527

 Score = 74.3 bits (181), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 1   VKCGSRRERCGYRLVRRQRSADEQLHCAGKAKRSGGHAPRVRELLLD 47
           VKCGSRRERCGYR+VRRQR++DEQLHC  K KR+G    RV+ELLL 
Sbjct: 212 VKCGSRRERCGYRIVRRQRNSDEQLHCLSKTKRNGAPMTRVKELLLS 258

78 IC50  Enzyme Inhibition Data in BindingDB for DNA-directed RNA polymerase I subunit RPA1
>pol:50006633>>DNA-directed RNA polymerase I subunit RPA1<<
          Length = 1720

 Score = 24.6 bits (52), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 15  VRRQRSADEQLHCAGKAKRSGGHAP 39
           V+RQR  +E  HC  +A R+  + P
Sbjct: 810 VKRQRIIEESTHCGPQAVRAALNLP 834


  Database: /tmp/Blast/protein/polymeraa
    Posted date:  Mar 5, 2024  2:09 PM
  Number of letters in database: 5,176,365
  Number of sequences in database:  8888
  
Lambda     K      H
   0.325    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 8888
Number of Hits to DB: 468,996
Number of extensions: 11800
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 6
Length of query: 47
Length of database: 5,176,365
Length adjustment: 21
Effective length of query: 26
Effective length of database: 4,989,717
Effective search space: 129732642
Effective search space used: 129732642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)