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Download an SDfile with all compounds in BindingDB, with target and affinity data:

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The database you are about to use is protected under copyright and/or patent law. While you are free to use the data from BindingDB for research purposes, you are not permitted to republish information from or in the Binding Database for a commercial purpose. You agree to cite any usage of BindingDB in any resulting publication by referring to the following articles:

  • Chen,X., Lin,Y., Liu,M. and Gilson,M.K. The Binding Database: Data Management and Interface Design Bioinformatics 18:130-139(2002).
  • Liu,T., Lin,Y., Wen,X., Jorrisen, R.N. and Gilson,M.K. BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities Nucleic Acids Research 35:D198-D201 (2007).

By downloading data, you are acknowledging that you have read, understand, and will abide by this statement. Should you have any questions or concerns, please contact Michael K. Gilson at mgilson@ucsd.edu for further information.

Documentation of BindingDB’s SDfile format.