3PDQ: Crystal structure of JMJD2A complexed with bipyridyl inhibitor

PDB ID: 3PDQDownload
MMDB ID: 89542
PDB Deposition Date: 2010/10/23
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.989  Å
Source Organism:
Similar Structures:
Biological Unit for 3PDQ: monomeric; determined by author and by software (PISA)
Molecular Components in 3PDQ
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4A
(Gene symbol: KDM4A)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
NICKEL (II) IONNICKEL (II) ION
2
1
ZINC IONZINC ION
3
1
4'-[(2-aminoethyl)carbamoyl]-2,2'-bipyridine-4-carboxylic acid4'-[(2-aminoethyl)carbamoyl]-2,2'-bipyridine-4-carboxylic acid
4
4
CHLORIDE IONCHLORIDE ION
5
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303