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Messages BindingDB is beginning to incorporate quantatitive binding data from PubChem assays. See http://www.bindingdb.org/bind/ByPCBioAssay.jsp

BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules.

What's new: data entered within the last 30 days

BindingDB Affinity Statistics

Monthly Growth of Data Holdings

References

  1. Liu,T., Lin,Y., Wen,X., Jorrisen, R.N. and Gilson,M.K. BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities Nucleic Acids Research 35:D198-D201 (2007).    [pdf]
  2. Chen,X., Lin,Y. and Gilson,M.K. The Binding Database: Overview and User's Guide Biopolymers Nucleic Acid Sci. 61:127-141 (2002).
  3. Chen,X., Lin,Y., Liu,M. and Gilson,M.K. The Binding Database: Data Management and Interface Design Bioinformatics 18:130-139(2002).
  4. Chen,X., Liu,M., and Gilson,M.K. Binding DB: A web-accessible molecular recognition database J. Combi. Chem. High-Throughput Screen 4:719-725 (2001).
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BindingDB News

April, 2009. 1) Enhanced search results page.
2) Chemical structure search page improved with "AND" and "OR" options.
3) Molecular weight search page improved with "Ki" and "IC50" options.

February, 2009. BindingDB grant renewed.

May, 2008. Response times improved with new server and software tuning.

April, 2008. New Page with UniProtKB accession number search into BindingDB.

March, 2008. Links from ligands in PDB into BindingDB.

February, 2008. New view of data from last 30 days.

January 2008. Page of URLs with search links into BindingDB.

July, 2007. SDFile of all BindingDB compounds, with target and affinity data, made available for download. The SDfile format is documented here.