Ki Summary BindingDB logo
myBDB logout
Reaction Details
Report a problem with these data
TargetTyrosyl-DNA phosphodiesterase 1 (TDP1)
LigandBDBM50366388
Substrate/Competitorn/a
Meas. Tech.ChEMBL_830581
IC50 8000000±n/a nM
Citation Nguyen, TXMorrell, AConda-Sheridan, MMarchand, CAgama, KBermingham, ABermingam, AStephen, AGChergui, ANaumova, AFisher, RO'Keefe, BRPommier, YCushman, M Synthesis and biological evaluation of the first dual tyrosyl-DNA phosphodiesterase I (Tdp1)-topoisomerase I (Top1) inhibitors. J Med Chem55:4457-78 (2012) [PubMed]  Article
More Info.:Get all data from this article,  Assay Method
 
Tyrosyl-DNA phosphodiesterase 1 (TDP1)
Name:Tyrosyl-DNA phosphodiesterase 1
Synonyms:Tyrosyl-DNA phosphodiesterase 1
Type:Enzyme
Mol. Mass.:68430.66
Organism:Homo sapiens (Human)
Description:Q9NUW8
Residue:608
Sequence:
MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI
SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN
DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS
GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA
QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP
LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG
RFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM
LTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKW
SAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELG
VLFLPSAFGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDT
HGNMWVPS
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
BDBM50366388
NameBDBM50366388
Synonyms:NEOMYCIN | NEOMYCIN A
TypeSmall organic molecule
Emp. Form.C23H46N6O13
Mol. Mass.614.6437
SMILESNCC1O[C@@H](O[C@@H]2[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](N)C[C@@H](N)[C@@H]3O[C@H]3O[C@H](CN)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O)[C@@H](N)[C@H](O)[C@H]1O |r|
Structure
Search PDB for entries with ligand similarity:Similarity to this molecule at least:
n/a