Discovery of a Small-Molecule Inhibitor of Interleukin 15: Pharmacophore-Based Virtual Screening and Hit Optimization

J Med Chem. 2017 Jul 27;60(14):6249-6272. doi: 10.1021/acs.jmedchem.7b00485. Epub 2017 Jul 18.

Abstract

Interleukin (IL)-15 is a pleiotropic cytokine, which is structurally close to IL-2 and shares with it the IL-2 β and γ receptor (R) subunits. By promoting the activation and proliferation of NK, NK-T, and CD8+ T cells, IL-15 plays important roles in innate and adaptative immunity. Moreover, the association of high levels of IL-15 expression with inflammatory and autoimmune diseases has led to the development of various antagonistic approaches targeting IL-15. This study is an original approach aimed at discovering small-molecule inhibitors impeding IL-15/IL-15R interaction. A pharmacophore and docking-based virtual screening of compound libraries led to the selection of 240 high-scoring compounds, 36 of which were found to bind IL-15, to inhibit the binding of IL-15 to the IL-2Rβ chain or the proliferation of IL-15-dependent cells or both. One of them was selected as a hit and optimized by a structure-activity relationship approach, leading to the first small-molecule IL-15 inhibitor with sub-micromolar activity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Cell Proliferation / drug effects
  • Databases, Chemical
  • Humans
  • Interleukin-15 / antagonists & inhibitors*
  • Interleukin-15 / chemistry
  • Interleukin-15 / metabolism
  • Interleukin-2 Receptor beta Subunit / chemistry
  • Interleukin-2 Receptor beta Subunit / metabolism
  • Mice
  • Molecular Docking Simulation
  • Phthalazines / chemical synthesis
  • Phthalazines / chemistry*
  • Phthalazines / pharmacology
  • Small Molecule Libraries / chemistry
  • Stereoisomerism
  • Structure-Activity Relationship
  • Triazoles / chemical synthesis
  • Triazoles / chemistry*
  • Triazoles / pharmacology

Substances

  • Interleukin-15
  • Interleukin-2 Receptor beta Subunit
  • Phthalazines
  • Small Molecule Libraries
  • Triazoles