Please try our new beta-test BindingDB site!
- Responsive design for better display on tablests and phones
- New tool to filter search results by e.g. target, article, affinity, xtal structure
- Simplified new look
Access coronavirus binding data on our covid page here.
BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of June 26, 2022, BindingDB contains 41,296 Entries, each with a DOI, containing 2,533,459 binding data for 8,811 protein targets and 1,085,985 small molecules.
There are 5,988 protein-ligand crystal structures with BindingDB affinity measurements for proteins with 100% sequence identity, and 11,442 crystal structures allowing proteins to 85% sequence identity.
You can also use BindingDB data through the Registry of Open Data on AWS: https://registry.opendata.aws/binding-db.
Simple Search Article Titles, Authors, Assays, Compound Names, Target Names |
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Advanced Search | Combine multiple search criteria, such as chemical structures, target names, and numerical affinities; restrict searches by data source, such as BindingDB, ChEMBL, PubChem, and Patents. |
Messages |
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Patent Curation by BindingDB |
BindingDB curates US Patents. We have scanned patents back to 2013 for suitable data and are currently up to date as of mid-2020. However, we cannot be sure of capturing all relevant patents, so if you know of a useful one we have missed, please let us know and we will try to curate it. As of June 26, 2022, BindingDB's patent dataset comprises:
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Journal Curation by BindingDB |
BindingDB continually curates a set of journals not covered by other public databases. As of June 26, 2022, the status of our current curation effort is as follows:
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myBDB | |
Video Tutorials |