Binding Loop Substitutions in the Cyclic Peptide SFTI-1 Generate Potent and Selective Chymase Inhibitors

J Med Chem. 2020 Jan 23;63(2):816-826. doi: 10.1021/acs.jmedchem.9b01811. Epub 2020 Jan 9.

Abstract

Chymase is a serine protease that is predominantly expressed by mast cells and has key roles in immune defense and the cardiovascular system. This enzyme has also emerged as a therapeutic target for cardiovascular disease due to its ability to remodel cardiac tissue and generate angiotensin II. Here, we used the nature-derived cyclic peptide sunflower trypsin inhibitor-1 (SFTI-1) as a template for designing novel chymase inhibitors. The key binding contacts of SFTI-1 were optimized by combining a peptide substrate library screen with structure-based design, which yielded several variants with potent activity. The lead variant was further modified by replacing the P1 Tyr residue with para-substituted Phe derivatives, generating new inhibitors with improved potency (Ki = 1.8 nM) and higher selectivity over closely related enzymes. Several variants were shown to block angiotensin I cleavage in vitro, highlighting their potential for further development and future evaluation as pharmaceutical leads.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Angiotensin II / biosynthesis
  • Chymases / antagonists & inhibitors*
  • Crystallography, X-Ray
  • Drug Design
  • High-Throughput Screening Assays
  • Humans
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Peptide Fragments / chemistry*
  • Peptide Fragments / pharmacology*
  • Peptides, Cyclic / chemistry*
  • Peptides, Cyclic / pharmacology*
  • Phenylalanine / chemistry
  • Serine Proteinase Inhibitors / chemistry*
  • Serine Proteinase Inhibitors / pharmacology*
  • Small Molecule Libraries
  • Structure-Activity Relationship
  • Tyrosine / chemistry

Substances

  • Peptide Fragments
  • Peptides, Cyclic
  • SFTI-1 peptide, sunflower
  • Serine Proteinase Inhibitors
  • Small Molecule Libraries
  • Angiotensin II
  • Tyrosine
  • Phenylalanine
  • Chymases